Epidemic profile of Shiga-toxin-producing Escherichia coli O104:H4 outbreak in Germany, HUS Investigation Team N Engl J Med, vol.365, pp.1771-1780, 2011. ,
Outbreak of haemolytic uraemic syndrome and bloody diarrhoea due to Escherichia coli O104:H4, south-west France, Euro Surveill, vol.16, 2011. ,
Characterisation of the Escherichia coli strain associated with an outbreak of haemolytic uraemic syndrome in Germany, 2011: a microbiological study, The Lancet Infectious Diseases, vol.11, issue.9, pp.671-676, 2011. ,
DOI : 10.1016/S1473-3099(11)70165-7
Large and ongoing outbreak of haemolytic uraemic syndrome, HUS investigation team Euro Surveill, vol.16, 2011. ,
Characteristics of the enteroaggregative Shiga toxin/verotoxinproducing Escherichia coli O104:H4 strain causing the outbreak of haemolytic uraemic syndrome in Germany, Euro Surveill, vol.16, 2011. ,
The new face of enterohaemorrhagic Escherichia coli infections, Euro Surveill, vol.16, 2011. ,
Escherichia coli O104:H4 south-west France, June 2011, The Lancet Infectious Diseases, vol.11, issue.10, pp.732-733, 2011. ,
DOI : 10.1016/S1473-3099(11)70266-3
URL : https://hal.archives-ouvertes.fr/pasteur-01120960
O104:H4, New England Journal of Medicine, vol.365, issue.8, pp.718-724 ,
DOI : 10.1056/NEJMoa1107643
Genome sequence analyses of two isolates from the recent Escherichia coli outbreak in Germany reveal the emergence of a new pathotype: Entero-Aggregative-Haemorrhagic Escherichia coli (EAHEC), Archives of Microbiology, vol.39, issue.12, pp.883-891, 2011. ,
DOI : 10.1007/s00203-011-0725-6
Emerging Foodborne Pathogens: Escherichia coil O157:H7 as a Model of Entry of a New Pathogen into the Food Supply of the Developed World, Epidemiologic Reviews, vol.18, issue.1, pp.29-51, 1996. ,
DOI : 10.1093/oxfordjournals.epirev.a017914
Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths, PLoS Genetics, vol.68, issue.1, p.1000344, 2009. ,
DOI : 10.1371/journal.pgen.1000344.s016
URL : https://hal.archives-ouvertes.fr/hal-00390293
Prospective Genomic Characterization of the German Enterohemorrhagic Escherichia coli O104:H4 Outbreak by Rapid Next Generation Sequencing Technology, PLoS ONE, vol.61, issue.7, p.22751, 2011. ,
DOI : 10.1371/journal.pone.0022751.s002
Comparisons of dN/dS are time dependent for closely related bacterial genomes, Journal of Theoretical Biology, vol.239, issue.2, pp.226-235, 2006. ,
DOI : 10.1016/j.jtbi.2005.08.037
Strain Causing an Outbreak of Hemolytic???Uremic Syndrome in Germany, New England Journal of Medicine, vol.365, issue.8, pp.709-717, 2011. ,
DOI : 10.1056/NEJMoa1106920
Relevance of sprouts and germ buds as well as seeds for sprout production in the current EHEC O104:H4 outbreak event in, Updated Opinion BfR, issue.23, 2011. ,
Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak, New England Journal of Medicine, vol.364, issue.8, pp.730-739, 2011. ,
DOI : 10.1056/NEJMoa1003176
Evolution of MRSA During Hospital Transmission and Intercontinental Spread, Science, vol.327, issue.5964, pp.469-474, 2010. ,
DOI : 10.1126/science.1182395
Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation, Proceedings of the National Academy of Sciences, vol.108, issue.12, pp.5027-5032, 2011. ,
DOI : 10.1073/pnas.1016657108
Presence of Enterohemorrhagic Escherichia coli ST678/O104:H4 in France Prior to 2011, Applied and Environmental Microbiology, vol.77, issue.24, pp.8784-8786, 2011. ,
DOI : 10.1128/AEM.06524-11
URL : https://hal.archives-ouvertes.fr/pasteur-01120952
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data, Genome Research, vol.20, issue.9, pp.1297-1303, 2010. ,
DOI : 10.1101/gr.107524.110
A framework for variation discovery and genotyping using next-generation DNA sequencing data, Nature Genetics, vol.8, issue.5, pp.491-498, 2011. ,
DOI : 10.1126/science.1177074
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods, Molecular Biology and Evolution, vol.28, issue.10, pp.2731-2739, 2011. ,
DOI : 10.1093/molbev/msr121
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement, PLoS ONE, vol.15, issue.6, p.11147, 2010. ,
DOI : 10.1371/journal.pone.0011147.s005