A. Alvarado, M. P. Garcillán-barcia, and F. De-la-cruz, A degenerate primer MOB typing (DPMT) 291 method to classify gamma-proteobacterial plasmids in clinical and environmental settings, PLoS One, vol.292, issue.7, p.40438, 2012.

M. I. Bahl, M. Burmølle, A. Meisner, L. H. Hansen, and S. J. Sørensen, All IncP-1 plasmid subgroups, 294 including the novel epsilon subgroup, are prevalent in the influent of a Danish wastewater 295 treatment plant, Plasmid, vol.62, issue.2, pp.134-139, 2009.

C. Branger, O. Zamfir, S. Geoffroy, G. Laurans, G. Arlet et al., 297 Genetic background of Escherichia coli and extended-spectrum beta-lactamase type, Emerg 298 Infect Dis, vol.11, issue.1, pp.54-61, 2005.
DOI : 10.3201/eid1101.040257

URL : https://doi.org/10.3201/eid1101.040257

V. Burrus, J. Marrero, and M. K. Waldor, The current ICE age: biology and evolution of SXT-related 300 integrating conjugative elements, Plasmid, vol.55, issue.3, pp.173-183, 2006.

A. Carattoli, Resistance plasmid families in Enterobacteriaceae, Antimicrob Agents Chemother, vol.302, issue.6, pp.2227-2238, 2009.
DOI : 10.1128/aac.01707-08

URL : https://aac.asm.org/content/53/6/2227.full.pdf

A. Carattoli, Plasmids in Gram negatives: molecular typing of resistance plasmids, Int J Med 304 Microbiol, vol.301, issue.8, pp.654-658, 2011.

A. Carattoli, Plasmids and the spread of resistance, Int J Med Microbiol, issue.13, pp.1438-4221, 2013.

A. Carattoli, A. Bertini, L. Villa, V. Falbo, K. L. Hopkins et al., Identification of plasmids by PCR-307 based replicon typing, J Microbiol Methods, vol.63, issue.3, pp.219-228, 2005.

M. Couturier, F. Bex, P. L. Bergquist, and W. K. Maas, Identification and classification of bacterial 309 plasmids, Microbiol Rev, vol.52, issue.3, pp.375-395, 1988.

T. Curiao, R. Cantón, M. P. Garcillán-barcia, F. De-la-cruz, F. Baquero et al., Association of 311 composite IS26-sul3 elements with highly transmissible IncI1 plasmids in extended-spectrum-312 beta-lactamase-producing Escherichia coli clones from humans, Antimicrob Agents 313 Chemother, vol.55, issue.5, pp.2451-2457, 2011.

C. Dallenne, D. Costa, A. Decré, D. Favier, C. Arlet et al., Development of a set of multiplex PCR 315 assays for the detection of genes encoding important beta-lactamases in Enterobacteriaceae, J Antimicrob Chemother, vol.65, issue.3, pp.490-495, 2010.

N. Datta and R. W. Hedges, Compatibility groups among fi -R factors, Nature, vol.234, issue.5326, pp.222-223, 1971.

N. Datta, R. W. Hedges, E. J. Shaw, R. B. Sykes, and M. H. Richmond, Properties of an R factor from 319 Pseudomonas aeruginosa, J Bacteriol, vol.108, issue.3, pp.1244-1249, 1971.

M. V. Francia, A. Varsaki, M. P. Garcillán-barcia, A. Latorre, C. Drainas et al., A classification 321 scheme for mobilization regions of bacterial plasmids, FEMS Microbiol Rev, vol.28, issue.1, pp.79-100, 2004.

A. García-fernández and A. Carattoli, Plasmid double locus sequence typing for IncHI2 plasmids, a 323 subtyping scheme for the characterization of IncHI2 plasmids carrying extended-spectrum 324 beta-lactamase and quinolone resistance genes, J Antimicrob Chemother, vol.65, issue.6, pp.1155-1161, 2010.

A. García-fernández, G. Chiaretto, A. Bertini, L. Villa, D. Fortini et al., Multilocus 326 sequence typing of IncI1 plasmids carrying extended-spectrum beta-lactamases in 327, 2008.

, Escherichia coli and Salmonella of human and animal origin, J Antimicrob Chemother, vol.61, issue.6, pp.1229-1233

A. García-fernández, D. Fortini, K. Veldman, D. Mevius, and A. Carattoli, Characterization of plasmids 330 harbouring qnrS1, qnrB2 and qnrB19 genes in Salmonella, J Antimicrob Chemother, vol.63, issue.2, pp.331-274, 2009.

A. García-fernández, L. Villa, A. Moodley, H. Hasman, V. Miriagou et al., , p.333, 2011.

, Multilocus sequence typing of IncN plasmids, J Antimicrob Chemother, vol.66, issue.9, pp.1987-1991

M. P. Garcillán-barcia, M. V. Francia, and F. De-la-cruz, The diversity of conjugative relaxases and its 335 application in plasmid classification, FEMS Microbiol Rev, vol.33, issue.3, pp.657-687, 2009.

, c) Multiplex PCR assay of the Hi?, Hi? and HI? 409 relaxase genes

E. Coli, Coli 106 ; 6, E. coli J53 (negative control). (d) Multiplex PCR assay of the 411

, (e) Multiplex 413 PCR assay of the MobP5-1, MobP5-2, MobP5-3, MobC11 and MobQu relaxase genes

E. Coli, 99 recipient cell ; 6, E. coli J53 (negative control). (f) Multiplex PCR assay of the 417

. Incp1?, . Incq1, . Incu, and . Incw-relaxase-genes, Lanes : 1, E. coli Ec43681 ; 2, S. enterica 418 S1922 recipient cell, (g) Simplex PCR assay of the IncB/O and IncK relaxase genes, vol.3