R. Webster, W. Bean, O. Gorman, T. Chambers, and Y. Kawaoka, Evolution and ecology of influenza A viruses, Microbiol Rev, vol.56, pp.152-179, 1992.

P. Palese and M. Shaw, Orthomyxoviridae: The viruses and their replication, Fields virology, pp.1647-1689, 2007.

M. Bergmann and T. Muster, Mutations in the nonconserved noncoding sequences of the influenza A virus segments affect viral vRNA formation, Virus Research, vol.44, issue.1, pp.23-31, 1996.
DOI : 10.1016/0168-1702(96)01335-4

B. Crescenzo-chaigne, C. Barbezange, and S. Van-der-werf, Non coding extremities of the seven influenza virus type C vRNA segments: effect on transcription and replication by the type C and type A polymerase complexes, Virology Journal, vol.5, issue.1, pp.132-142, 2008.
DOI : 10.1186/1743-422X-5-132
URL : https://hal.archives-ouvertes.fr/pasteur-00379495

D. Jackson, R. Elderfield, and W. Barclay, Molecular studies of influenza B virus in the reverse genetics era, Journal of General Virology, vol.92, issue.1, pp.1-17, 2011.
DOI : 10.1099/vir.0.026187-0

U. Desselberger, V. Racaniello, J. Zazra, and P. Palese, The 3' and 5'-terminal sequences of influenza A, B and C virus RNA segments are highly conserved and show partial inverted complementarity, Gene, vol.8, issue.3, pp.315-32810, 1980.
DOI : 10.1016/0378-1119(80)90007-4

J. Robertson, 5??? and 3??? terminal nucleotide sequences of the RNA genome segments of influenza virus, Nucleic Acids Research, vol.6, issue.12, pp.3745-3757, 1979.
DOI : 10.1093/nar/6.12.3745

M. Stoeckle, M. Shaw, and P. Choppin, Segment-specific and common nucleotide sequences in the noncoding regions of influenza B virus genome RNAs., Proceedings of the National Academy of Sciences, vol.84, issue.9, pp.2703-2707, 1987.
DOI : 10.1073/pnas.84.9.2703

G. Neumann, G. Brownlee, E. Fodor, and Y. Kawaoka, Orthomyxovirus Replication, Transcription, and Polyadenylation, Curr Top Microbiol Immunol, vol.283, pp.121-143, 2004.
DOI : 10.1007/978-3-662-06099-5_4

B. Crescenzo-chaigne, S. Van-der-werf, and N. Naffakh, Differential Effect of Nucleotide Substitutions in the 3??? Arm of the Influenza A Virus vRNA Promoter on Transcription/Replication by Avian and Human Polymerase Complexes Is Related to the Nature of PB2 Amino Acid 627, Virology, vol.303, issue.2, pp.240-252, 2002.
DOI : 10.1006/viro.2002.1637

E. Fodor, D. Pritlove, and G. Brownlee, The influenza virus panhandle is involved in the initiation of transcription, J Virol, vol.68, pp.4092-4096, 1994.

E. Fodor, D. Pritlove, and G. Brownlee, Characterization of the RNA-fork model of virion RNA in the initiation of transcription in influenza A virus, J Virol, vol.69, pp.4012-4019, 1995.

M. Hsu, J. Parvin, S. Gupta, M. Krystal, and P. Palese, Genomic RNAs of influenza viruses are held in a circular conformation in virions and in infected cells by a terminal panhandle., Proceedings of the National Academy of Sciences, vol.84, issue.22, p.2446318, 1987.
DOI : 10.1073/pnas.84.22.8140

H. Cheong, C. Cheong, Y. Lee, B. Seong, and B. Choi, Structure of influenza virus panhandle RNA studied by NMR spectroscopy and molecular modeling, Nucleic Acids Research, vol.27, issue.5, pp.1392-1397, 1999.
DOI : 10.1093/nar/27.5.1392

B. Crescenzo-chaigne and S. Van-der-werf, Nucleotides at the extremities of the viral RNA of influenza C virus are involved in type-specific interactions with the polymerase complex, Journal of General Virology, vol.82, issue.5, pp.1075-1083, 2001.
DOI : 10.1099/0022-1317-82-5-1075

M. Crow, T. Deng, M. Addley, and G. Brownlee, Mutational Analysis of the Influenza Virus cRNA Promoter and Identification of Nucleotides Critical for Replication, Journal of Virology, vol.78, issue.12, pp.6263-6270, 2004.
DOI : 10.1128/JVI.78.12.6263-6270.2004

R. Flick, G. Neumann, E. Hoffmann, E. Neumeier, and G. Hobom, Promoter elements in the influenza vRNA terminal structure, RNA, vol.2, pp.1046-1057, 1996.

D. Pritlove, L. Poon, L. Devenish, M. Leahy, and G. Brownlee, A hairpin loop at the 5' end of influenza A virus virion RNA is required for synthesis of poly(A)+ mRNA in vitro, J Virol, vol.73, pp.2109-2114, 1999.

E. Fodor, L. Devenish, O. Engelhardt, P. Palese, and G. Brownlee, Rescue of influenza A virus from recombinant, DNA -J Virol, vol.73, pp.9679-9682, 1999.

G. Neumann, T. Watanabe, H. Ito, S. Watanabe, and H. Goto, Generation of influenza A viruses entirely from cloned cDNAs, Proceedings of the National Academy of Sciences, vol.96, issue.16, 1999.
DOI : 10.1073/pnas.96.16.9345

B. Crescenzo-chaigne and S. Van-der-werf, Rescue of Influenza C Virus from Recombinant DNA, Journal of Virology, vol.81, issue.20, pp.11282-11289, 2007.
DOI : 10.1128/JVI.00910-07
URL : https://hal.archives-ouvertes.fr/pasteur-01103993

M. Panneerselvam, S. Welt, L. Old, and C. Vogel, A molecular mechanism of complement resistance of human melanoma cells, J Immunol, vol.136, pp.2534-2541, 1986.

G. Marsh, R. Hatami, and P. Palese, Specific Residues of the Influenza A Virus Hemagglutinin Viral RNA Are Important for Efficient Packaging into Budding Virions, Journal of Virology, vol.81, issue.18, pp.9727-9736, 2007.
DOI : 10.1128/JVI.01144-07

S. Wong, J. Chan, K. Lee, E. Lo, and D. Tsang, Development of a quantitative assay for SARS coronavirus and correlation of GAPDH mRNA with SARS coronavirus in clinical specimens, Journal of Clinical Pathology, vol.58, issue.3, 2005.
DOI : 10.1136/jcp.2004.016592

M. Vignuzzi, S. Gerbaud, S. Van-der-werf, and N. Escriou, Naked RNA immunization with replicons derived from poliovirus and Semliki Forest virus genomes for the generation of a cytotoxic T cell response against the influenza A virus nucleoprotein, Journal of General Virology, vol.82, issue.7, pp.1737-1747, 2001.
DOI : 10.1099/0022-1317-82-7-1737

K. Fujii, M. Ozawa, K. Iwatsuki-horimoto, T. Horimoto, and Y. Kawaoka, Incorporation of influenza A virus genome segments does not absolutely require wild-type sequences, Journal of General Virology, vol.90, issue.7, 2009.
DOI : 10.1099/vir.0.010355-0

B. Hale, R. Randall, J. Ortín, and D. Jackson, The multifunctional NS1 protein of influenza A viruses, Journal of General Virology, vol.89, issue.10, pp.2359-2376, 2008.
DOI : 10.1099/vir.0.2008/004606-0

J. Lee, S. Kim, P. Pascua, M. Song, and Y. Baek, RETRACTED: Direct interaction of cellular hnRNP-F and NS1 of influenza A virus accelerates viral replication by modulation of viral transcriptional activity and host gene expression, Virology, vol.397, issue.1, 2010.
DOI : 10.1016/j.virol.2009.10.041

K. Shimizu, H. Handa, S. Nakada, and K. Nagata, Regulation of influenza virus RNA polymerase activity by cellular and viral factors, Nucleic Acids Research, vol.22, issue.23, pp.5047-5053, 1994.
DOI : 10.1093/nar/22.23.5047

N. Robb, M. Smith, F. Vreede, and E. Fodor, NS2/NEP protein regulates transcription and replication of the influenza virus RNA genome, Journal of General Virology, vol.90, issue.6, pp.1398-1407, 2009.
DOI : 10.1099/vir.0.009639-0

J. Perez, A. Varble, R. Sachidanandam, I. Zlatev, and M. Manoharan, Influenza A virus-generated small RNAs regulate the switch from transcription to replication, Proceedings of the National Academy of Sciences, vol.107, issue.25, p.20534471, 2010.
DOI : 10.1073/pnas.1001984107

M. Lee, K. Klumpp, P. Digard, and L. Tiley, Activation of influenza virus RNA polymerase by the 5' and 3' terminal duplex of genomic RNA, Nucleic Acids Research, vol.31, issue.6, 2003.
DOI : 10.1093/nar/gkg253

A. Harris, G. Cardone, D. Winkler, J. Heymann, and M. Brecher, Influenza virus pleiomorphy characterized by cryoelectron tomography, Proceedings of the National Academy of Sciences, vol.103, issue.50, 2006.
DOI : 10.1073/pnas.0607614103

F. Vendeix, A. Munoz, and P. Agris, Free energy calculation of modified base-pair formation in explicit solvent: A predictive model, RNA, vol.15, issue.12, 2009.
DOI : 10.1261/rna.1734309