Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli, Genetics, vol.158, pp.41-64, 2001. ,
Aeons of distress: an evolutionary perspective on the bacterial SOS response, FEMS Microbiology Reviews, vol.31, issue.6, pp.637-656, 2007. ,
DOI : 10.1111/j.1574-6976.2007.00082.x
Reconstruction of the evolutionary history of the LexA-binding sequence, Microbiology, vol.150, issue.11, pp.3783-3795, 2004. ,
DOI : 10.1099/mic.0.27315-0
Genomic analysis of LexA binding reveals the permissive nature of the Escherichia coli genome and identifies unconventional target sites, Genes & Development, vol.19, issue.21, pp.2619-2630, 2005. ,
DOI : 10.1101/gad.1355605
Genetic Composition of the Bacillus subtilis SOS System, Journal of Bacteriology, vol.187, issue.22, pp.7655-7666, 2005. ,
DOI : 10.1128/JB.187.22.7655-7666.2005
promoter by two repressors prevents premature colicin expression and cell lysis, Molecular Microbiology, vol.38, issue.1, pp.129-139, 2012. ,
DOI : 10.1111/j.1365-2958.2012.08179.x
LexA Cleavage Is Required for CTX Prophage Induction, Molecular Cell, vol.17, issue.2, pp.291-300, 2005. ,
DOI : 10.1016/j.molcel.2004.11.046
The SOS response promotes qnrB quinolone-resistance determinant expression, EMBO reports, vol.112, issue.8, pp.929-933, 2009. ,
DOI : 10.1128/AAC.00339-07
URL : https://hal.archives-ouvertes.fr/inserm-00533078
The SOS Response Controls Integron Recombination, Science, vol.324, issue.5930, p.1034, 2009. ,
DOI : 10.1126/science.1172914
URL : https://hal.archives-ouvertes.fr/hal-00409031
Antibiotic-induced SOS response promotes horizontal dissemination of pathogenicity island-encoded virulence factors in staphylococci, Molecular Microbiology, vol.181, issue.3, pp.836-844, 2005. ,
DOI : 10.1111/j.1365-2958.2005.04584.x
SOS response promotes horizontal dissemination of antibiotic resistance genes, Nature, vol.427, issue.6969, pp.72-74, 2004. ,
DOI : 10.1038/nature02241
Characterization of the Global Transcriptional Responses to Different Types of DNA Damage and Disruption of Replication in Bacillus subtilis, Journal of Bacteriology, vol.188, issue.15, pp.5595-5605, 2006. ,
DOI : 10.1128/JB.00342-06
Clostridium difficile infection: new developments in epidemiology and pathogenesis, Nature Reviews Microbiology, vol.36, issue.7, pp.526-536, 2009. ,
DOI : 10.1016/S0140-6736(97)08062-8
Novel High-Molecular-Weight, R-Type Bacteriocins of Clostridium difficile, Journal of Bacteriology, vol.194, issue.22, pp.6240-6247, 2012. ,
DOI : 10.1128/JB.01272-12
The recA gene from Clostridium perfringens is induced by methyl methanesulphonate and contains an upstream Cheo box, Microbiology, vol.143, issue.3, pp.143885-890, 1997. ,
DOI : 10.1099/00221287-143-3-885
Insertion or Deletion of the Cheo Box Modifies Radiation Inducibility of Clostridium Promoters, Applied and Environmental Microbiology, vol.67, issue.10, pp.4464-4470, 2001. ,
DOI : 10.1128/AEM.67.10.4464-4470.2001
Inference of self-regulated transcriptional networks by comparative genomics, Evol Bioinform Online, vol.8, pp.449-461, 2012. ,
Relationship Between Bacterial Strain Type, Host Biomarkers, and Mortality in Clostridium difficile Infection, Clinical Infectious Diseases, vol.56, issue.11, pp.1589-1600, 2013. ,
DOI : 10.1093/cid/cit127
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3641870
toxinotypes, FEMS Microbiology Reviews, vol.32, issue.3, pp.541-555, 2008. ,
DOI : 10.1111/j.1574-6976.2008.00110.x
Array comparative hybridisation reveals a high degree of similarity between UK and European clinical isolates of hypervirulent Clostridium difficile, BMC Genomics, vol.11, issue.1, p.389, 2010. ,
DOI : 10.1186/1471-2164-11-389
Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium, Genome Biology, vol.10, issue.9, p.102, 2009. ,
DOI : 10.1186/gb-2009-10-9-r102
Macro and Micro Diversity of Clostridium difficile Isolates from Diverse Sources and Geographical Locations, PLoS ONE, vol.178, issue.3, p.31559, 2012. ,
DOI : 10.1371/journal.pone.0031559.s013
Genetic markers for Clostridium difficile lineages linked to hypervirulence, Microbiology, vol.157, issue.11, pp.3113-3123, 2011. ,
DOI : 10.1099/mic.0.051953-0
A reexamination of information theory-based methods for DNA-binding site identification, BMC Bioinformatics, vol.10, issue.1, p.57, 2009. ,
DOI : 10.1186/1471-2105-10-57
Interconversion between bound and free conformations of LexA orchestrates the bacterial SOS response, Nucleic Acids Research, vol.39, issue.15, pp.6546-6557, 2011. ,
DOI : 10.1093/nar/gkr265
Characterization of the SigD Regulon of C. difficile and Its Positive Control of Toxin Production through the Regulation of tcdR, PLoS ONE, vol.4, issue.12, p.83748, 2013. ,
DOI : 10.1371/journal.pone.0083748.s004
URL : https://hal.archives-ouvertes.fr/pasteur-01370779
Effects of ciprofloxacin on the expression and production of exotoxins by Clostridium difficile, Journal of Medical Microbiology, vol.62, issue.Pt_5, pp.741-747, 2013. ,
DOI : 10.1099/jmm.0.056218-0
The bacterial LexA transcriptional repressor, Cellular and Molecular Life Sciences, vol.66, issue.1, pp.82-93, 2009. ,
DOI : 10.1007/s00018-008-8378-6
Comparison of Responses to Double-Strand Breaks between Escherichia coli and Bacillus subtilis Reveals Different Requirements for SOS Induction, Journal of Bacteriology, vol.191, issue.4, pp.1152-1161, 2009. ,
DOI : 10.1128/JB.01292-08
The NCBI BioSystems database, Nucleic Acids Research, vol.38, issue.Database, pp.492-496, 2010. ,
DOI : 10.1093/nar/gkp858
Reannotation of the genome sequence of Clostridium difficile strain 630, Journal of Medical Microbiology, vol.60, issue.8, pp.1193-1199, 2011. ,
DOI : 10.1099/jmm.0.030452-0
URL : https://hal.archives-ouvertes.fr/pasteur-01370838
Dendroscope: An interactive viewer for large phylogenetic trees, BMC Bioinformatics, vol.8, issue.1, p.460, 2007. ,
DOI : 10.1186/1471-2105-8-460
MEME SUITE: tools for motif discovery and searching, Nucleic Acids Research, vol.37, issue.Web Server, pp.202-208, 2009. ,
DOI : 10.1093/nar/gkp335
URL : http://doi.org/10.1093/nar/gkp335
RecA-Dependent Cleavage of LexA Dimers, Journal of Molecular Biology, vol.377, issue.1, pp.148-161, 2008. ,
DOI : 10.1016/j.jmb.2007.12.025
The LexA regulated genes of the Clostridium difficile, BMC Microbiology, vol.14, issue.1, p.88, 2014. ,
DOI : 10.1016/j.jmb.2007.12.025
URL : https://hal.archives-ouvertes.fr/pasteur-00976526