S. D. Bell and S. P. Jackson, Mechanism and regulation of transcription in archaea, Current Opinion in Microbiology, vol.4, issue.2, pp.208-213, 2001.
DOI : 10.1016/S1369-5274(00)00190-9

D. Langer, J. Hain, P. Thuriaux, and W. Zillig, Transcription in archaea: similarity to that in eucarya., Proc. Natl Acad. Sci. USA, pp.5768-5772, 1995.
DOI : 10.1073/pnas.92.13.5768

O. Littlefield, Y. Korkhin, and P. B. Sigler, The structural basis for the oriented assembly of a TBP, Proc. Natl Acad. Sci. USA, pp.13668-13673, 1999.

D. Prangishvilli, W. Zillig, A. Gierl, L. Biesert, and I. Holz, DNA-Dependent RNA Polymerases of Thermoacidophilic Archaebacteria, European Journal of Biochemistry, vol.358, issue.3, pp.471-477, 1982.
DOI : 10.1111/j.1432-1033.1982.tb06461.x

S. A. Qureshi, P. Baumann, T. Rowlands, B. Khoo, and S. P. Jackson, Cloning and functional analysis of the TATA binding protein from Sulfolobus shibatae, Nucleic Acids Research, vol.23, issue.10, pp.1775-1781, 1995.
DOI : 10.1093/nar/23.10.1775

W. Zillig, P. Palm, H. P. Klenk, D. Langer, U. Hüdepohl et al., Transcription in Archaea, 1993.

W. Zillig, K. O. Stetter, and D. Janekovic, DNA-Dependent RNA Polymerase from the Archaebacterium Sulfolobus acidocaldarius, European Journal of Biochemistry, vol.170, issue.3, pp.597-604, 1979.
DOI : 10.1016/0014-5793(70)80519-1

T. J. Darcy, W. Hausner, D. E. Awery, A. M. Edwards, M. Thomm et al., Methanobacterium thermoautotrophicum RNA polymerase and transcription in vitro, J. Bacteriol, vol.181, pp.4424-4429, 1999.

G. Frey, M. Thomm, B. Brudigam, H. P. Gohl, and W. Hausner, is mediated by a transcription factor, Nucleic Acids Research, vol.18, issue.6, pp.1361-1367, 1990.
DOI : 10.1093/nar/18.6.1361

W. Hausner, G. Frey, and M. Thomm, Control regions of an archaeal gene, Journal of Molecular Biology, vol.222, issue.3, pp.495-508, 1991.
DOI : 10.1016/0022-2836(91)90492-O

C. Hethke, A. C. Geerling, W. Hausner, W. M. De-vos, and M. Thomm, A Cell-Free Transcription System for the Hyperthermophilic Archaeon Pyrococcus Furiosus, Nucleic Acids Research, vol.24, issue.12, pp.2369-2376, 1996.
DOI : 10.1093/nar/24.12.2369

U. Hudepohl, W. D. Reiter, and W. Zillig, In vitro transcription of two rRNA genes of the archaebacterium Sulfolobus sp. B12 indicates a factor requirement for specific initiation., Proc. Natl Acad. Sci. USA, pp.5851-5855, 1990.
DOI : 10.1073/pnas.87.15.5851

S. A. Qureshi, S. D. Bell, and S. P. Jackson, Factor requirements for transcription in the Archaeon Sulfolobus shibatae, The EMBO Journal, vol.16, issue.10, pp.2927-2936, 1997.
DOI : 10.1093/emboj/16.10.2927

L. Aravind and E. V. Koonin, DNA-binding proteins and evolution of transcription regulation in the archaea, Nucleic Acids Research, vol.27, issue.23, pp.4658-4670, 1999.
DOI : 10.1093/nar/27.23.4658

A. B. Brinkman, T. J. Ettema, W. M. De-vos, and J. Van-der-oost, The Lrp family of transcriptional regulators, Molecular Microbiology, vol.32, issue.2, pp.287-294, 2003.
DOI : 10.1046/j.1365-2958.2003.03442.x

M. Ouhammouch, R. E. Dewhurst, W. Hausner, M. Thomm, and E. P. Geiduschek, Activation of archaeal transcription by recruitment of the TATA-binding protein, Proc. Natl Acad. Sci. USA, pp.5097-5102, 2003.
DOI : 10.1073/pnas.0837150100

M. Ouhammouch and E. P. Geiduschek, An expanding family of archaeal transcriptional activators, Proc. Natl Acad. Sci. USA, pp.15423-15428, 2005.
DOI : 10.1073/pnas.0508043102

S. D. Bell, S. S. Cairns, R. L. Robson, and S. P. Jackson, Transcriptional Regulation of an Archaeal Operon In Vivo and In Vitro, Molecular Cell, vol.4, issue.6, pp.971-982, 1999.
DOI : 10.1016/S1097-2765(00)80226-9

A. B. Brinkman, I. Dahlke, J. E. Tuininga, T. Lammers, V. Dumay et al., An Lrp-like Transcriptional Regulator from the Archaeon Pyrococcus furiosus Is Negatively Autoregulated, Journal of Biological Chemistry, vol.275, issue.49, pp.38160-38169, 2000.
DOI : 10.1074/jbc.M005916200

I. Dahlke and M. Thomm, A Pyrococcus homolog of the leucine-responsive regulatory protein, LrpA, inhibits transcription by abrogating RNA polymerase recruitment, Nucleic Acids Research, vol.30, issue.3, pp.701-710, 2002.
DOI : 10.1093/nar/30.3.701

S. D. Bell and S. P. Jackson, Mechanism of Autoregulation by an Archaeal Transcriptional Repressor, Journal of Biological Chemistry, vol.275, issue.41, pp.31624-31629, 2000.
DOI : 10.1074/jbc.M005422200

A. Napoli, J. Van-der-oost, C. W. Sensen, R. L. Charlebois, M. Rossi et al., An Lrp-like protein of the hyperthermophilic archaeon Sulfolobus solfataricus which binds to its own promoter, J. Bacteriol, vol.181, pp.1474-1480, 1999.

G. Vierke, A. Engelmann, C. Hebbeln, and M. Thomm, A Novel Archaeal Transcriptional Regulator of Heat Shock Response, Journal of Biological Chemistry, vol.278, issue.1, pp.18-26, 2003.
DOI : 10.1074/jbc.M209250200

A. Kessler, A. B. Brinkman, J. Van-der-oost, and D. Prangishvili, Transcription of the Rod-Shaped Viruses SIRV1 and SIRV2 of the Hyperthermophilic Archaeon Sulfolobus, Journal of Bacteriology, vol.186, issue.22, pp.7745-7753, 2004.
DOI : 10.1128/JB.186.22.7745-7753.2004

O. S. Gabrielsen, E. Hornes, L. Korsnes, A. Ruet, and T. B. Oyen, Magnetic DNA affinity purification of yeast transcription factor ?????a new purification principle for the ultrarapid isolation of near homogeneous factor, Nucleic Acids Research, vol.17, issue.15, pp.6253-6267, 1989.
DOI : 10.1093/nar/17.15.6253

W. Zillig, A. Kletzin, C. Schleper, I. Holz, D. Janekovic et al., Screening for Sulfolobales, their Plasmids and their Viruses in Icelandic Solfataras, Systematic and Applied Microbiology, vol.16, issue.4, pp.609-628, 1994.
DOI : 10.1016/S0723-2020(11)80333-4

S. D. Bell and S. P. Jackson, The Role of Transcription Factor B in Transcription Initiation and Promoter Clearance in the Archaeon Sulfolobus acidocaldarius, Journal of Biological Chemistry, vol.275, issue.17, pp.12934-12940, 2000.
DOI : 10.1074/jbc.275.17.12934

C. N. Pace, F. Vajdos, L. Fee, G. Grimsley, and T. Gray, How to measure and predict the molar absorption coefficient of a protein, Protein Science, vol.33, issue.11, pp.2411-2423, 1995.
DOI : 10.1002/pro.5560041120

S. W. Provencher and J. Glockner, Estimation of globular protein secondary structure from circular dichroism, Biochemistry, vol.20, issue.1, pp.33-37, 1981.
DOI : 10.1021/bi00504a006

N. Sreerama and R. W. Woody, Estimation of Protein Secondary Structure from Circular Dichroism Spectra: Comparison of CONTIN, SELCON, and CDSSTR Methods with an Expanded Reference Set, Analytical Biochemistry, vol.287, issue.2, pp.252-260, 2000.
DOI : 10.1006/abio.2000.4880

F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer et al., NMRPipe: A multidimensional spectral processing system based on UNIX pipes, Journal of Biomolecular NMR, vol.6, issue.3, pp.277-293, 1995.
DOI : 10.1007/BF00197809

B. A. Johnson and R. A. Blevins, NMRView: a computer program for the visualisation and analysis of NMR data, J. Biomol. NMR, vol.4, pp.604-614, 1994.

D. J. States, R. A. Haberkorn, and D. J. Ruben, A two-dimensional nuclear overhauser experiment with pure absorption phase in four quadrants, Journal of Magnetic Resonance (1969), vol.48, issue.2, pp.286-292, 1982.
DOI : 10.1016/0022-2364(82)90279-7

S. F. Altschul, T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang et al., Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Research, vol.25, issue.17, pp.3389-3402, 1997.
DOI : 10.1093/nar/25.17.3389

A. Sali, J. P. Overington, M. S. Johnson, and T. L. Blundell, From comparisons of protein sequences and structures to protein modelling and design, Trends in Biochemical Sciences, vol.15, issue.6, pp.235-240, 1990.
DOI : 10.1016/0968-0004(90)90036-B

R. A. Laskowski, M. W. Macarthur, D. S. Moss, and J. M. Thornton, PROCHECK: a program to check the stereochemical quality of protein structures, Journal of Applied Crystallography, vol.26, issue.2, pp.283-291, 1993.
DOI : 10.1107/S0021889892009944

Q. She, R. K. Singh, F. Confalonieri, Y. Zivanovic, G. Allard et al., The complete genome of the crenarchaeon Sulfolobus solfataricus P2, Proc. Natl Acad. Sci. USA, pp.7835-7840, 2001.
DOI : 10.1073/pnas.141222098

S. S. Ray, J. B. Bonanno, H. Chen, H. De-lencastre, S. Wu et al., X-ray structure of an M. jannaschii DNA-binding protein: Implications for antibiotic resistance in S. aureus, Proteins: Structure, Function, and Bioinformatics, vol.26, issue.1, pp.170-173, 2003.
DOI : 10.1002/prot.10272

A. Marchler-bauer and S. H. Bryant, CD-Search: protein domain annotations on the fly, Nucleic Acids Research, vol.32, issue.Web Server, pp.327-331, 2004.
DOI : 10.1093/nar/gkh454

P. M. Leonard, S. H. Smits, S. E. Sedelnikova, A. B. Brinkman, W. M. De-vos et al., Crystal structure of the Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus, The EMBO Journal, vol.20, issue.5, pp.990-997, 2001.
DOI : 10.1093/emboj/20.5.990

L. Holm and C. Sander, Protein Structure Comparison by Alignment of Distance Matrices, Journal of Molecular Biology, vol.233, issue.1, pp.123-138, 1993.
DOI : 10.1006/jmbi.1993.1489

M. N. Alekshun, S. B. Levy, T. R. Mealy, B. A. Seaton, and J. F. Head, The crystal structure of MarR, a regulator of multiple antibiotic resistance, at 2.3 A resolution, Nature Structural Biology, vol.8, issue.8, pp.710-714, 2001.
DOI : 10.1038/90429

C. F. Wright, B. W. Oswald, and S. Dellis, Vaccinia Virus Late Transcription Is Activated in Vitro by Cellular Heterogeneous Nuclear Ribonucleoproteins, Journal of Biological Chemistry, vol.276, issue.44, pp.40680-40686, 2001.
DOI : 10.1074/jbc.M102399200

J. L. Meier, X. Luo, M. Sawadogo, and S. E. Straus, The cellular transcription factor USF cooperates with varicella-zoster virus immediate-early protein 62 to symmetrically activate a bidirectional viral promoter., Molecular and Cellular Biology, vol.14, issue.10, pp.6896-6906, 1994.
DOI : 10.1128/MCB.14.10.6896

T. Chong, D. Apt, B. Gloss, M. Isa, and H. U. Bernard, The enhancer of human papillomavirus type 16: binding sites for the ubiquitous transcription factors oct-1, NFA, TEF-2, NF1, and AP-1 participate in epithelial cell-specific transcription, J. Virol, vol.65, pp.5933-5943, 1991.

T. Chong, W. K. Chan, and H. U. Bernard, Transcriptional activation of human papillomavirus 16 by nuclear factor I, AP1, steroid receptors and a possibly novel transcription factor, PVF: a model for the composition of genital papillomavirus enhancers, Nucleic Acids Research, vol.18, issue.3, pp.465-470, 1990.
DOI : 10.1093/nar/18.3.465

P. D. Friesen, Regulation of Baculovirus Early Gene Expression, 1997.
DOI : 10.1007/978-1-4899-1834-5_6