A Re-Evaluation of M. prototuberculosis, PLoS Pathogens, vol.99, issue.9, 2006. ,
DOI : 0027-8424(2002)099[3684:ANESFT]2.0.CO;2
Ancient Origin and Gene Mosaicism of the Progenitor of Mycobacterium tuberculosis, PLoS Pathogens, vol.21, issue.1, 2005. ,
DOI : 10.1371/journal.ppat.0010005.st003
URL : https://hal.archives-ouvertes.fr/inserm-00080315
Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis, Proceedings of the National Academy of Sciences, vol.138, issue.4, pp.14043-14048, 1999. ,
DOI : 10.1006/mpat.1997.0154
Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old, Infection, Genetics and Evolution, vol.2, issue.1, pp.39-45, 2002. ,
DOI : 10.1016/S1567-1348(02)00089-8
Multiple independent origins of Shigella clones of Escherichia coli and convergent evolution of many of their characteristics, Proceedings of the National Academy of Sciences, vol.128, issue.9, pp.10567-10572, 2000. ,
DOI : 10.1099/00221287-128-9-1933
Bordetella pertussis, the Causative Agent of Whooping Cough, Evolved from a Distinct, Human-Associated Lineage of B. bronchiseptica, PLoS Pathogens, vol.98, issue.4, 2005. ,
DOI : 10.1371/journal.ppat.0010045.st003
Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination, Proceedings of the National Academy of Sciences, vol.64, issue.8, pp.9869-9874, 1997. ,
DOI : 10.1073/pnas.93.7.3132
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence, Nature, vol.25, issue.6685, pp.537-544, 1998. ,
DOI : 10.1038/31159
Whole-Genome Comparison of Mycobacterium tuberculosis Clinical and Laboratory Strains, Journal of Bacteriology, vol.184, issue.19, pp.5479-5490, 2002. ,
DOI : 10.1128/JB.184.19.5479-5490.2002
The complete genome sequence of Mycobacterium bovis, Proceedings of the National Academy of Sciences, vol.95, issue.7, pp.7877-7882, 2003. ,
DOI : 10.1073/pnas.95.7.3943
Insertion element IS1081?associated restriction fragment length polymorphisms in Mycobacterium tuberculosis complex species: A reliable tool for recognizing Mycobacterium bovis BCG, J Clin Microbiol, pp.1772-1777, 1992. ,
A Novel Pathogenic Taxon of the Mycobacterium tuberculosis Complex, Canetti: Characterization of an Exceptional Isolate from Africa, International Journal of Systematic Bacteriology, vol.47, issue.4, pp.1236-1245, 1997. ,
DOI : 10.1099/00207713-47-4-1236
Mycobacterium canettii, the Smooth Variant of M. tuberculosis, Isolated from a Swiss Patient Exposed in Africa, Emerging Infectious Diseases, vol.4, issue.4, pp.631-634, 1998. ,
DOI : 10.3201/eid0404.980414
Genetic Variation and Evolutionary Origin of the Direct Repeat Locus of Mycobacterium tuberculosis Complex Bacteria, Journal of Bacteriology, vol.182, issue.9, pp.2393-2401, 2000. ,
DOI : 10.1128/JB.182.9.2393-2401.2000
Fatty acid biosynthesis in Mycobacterium tuberculosis: Lateral gene transfer, adaptive evolution, and gene duplication, Proceedings of the National Academy of Sciences, vol.151, issue.2, pp.10320-10325, 2003. ,
DOI : 10.1016/0022-2836(91)90575-Q
Horizontal Transfer of a Virulence Operon to the Ancestor of Mycobacterium tuberculosis, Molecular Biology and Evolution, vol.23, issue.6, pp.1129-1135, 2006. ,
DOI : 10.1093/molbev/msj120
Naturally occurring horizontal gene transfer and homologous recombination in Mycobacterium, Microbiology, vol.150, issue.6, pp.1707-1712, 2004. ,
DOI : 10.1099/mic.0.27088-0
The relative contributions of recombination and point mutation to the diversification of bacterial clones, Current Opinion in Microbiology, vol.4, issue.5, pp.602-606, 2001. ,
DOI : 10.1016/S1369-5274(00)00257-5
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology, Int J Syst Evol Microbiol, vol.52, pp.1043-1047, 2002. ,
Opinion: Re-evaluating prokaryotic species, Nature Reviews Microbiology, vol.49, issue.9, pp.733-739, 2005. ,
DOI : 10.1128/AEM.71.2.930-939.2005
Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics, International Journal of Systematic and Evolutionary Microbiology, vol.37, issue.4, pp.463-464, 1987. ,
DOI : 10.1099/00207713-37-4-463
Faculty of 1000 biology Available: http://www. f1000biology.com/article/16201017/evaluation, 2005. ,