M. Anderson, P. J. Sansonetti, and B. S. Marteyn, Shigella diversity and changing landscape: insights for the twenty-first century, Front Cell Infect Microbiol, vol.6, p.45, 2016.

M. C. Anderson, T. Chaze, and Y. Coïc, MUB40 binds to lactoferrin and stands as a specific neutrophil marker, Cell Chem Biol, vol.25, pp.483-492, 2018.
URL : https://hal.archives-ouvertes.fr/pasteur-02573125

M. C. Anderson, P. Vonaesch, and A. Saffarian, Shigella sonnei encodes a functional T6SS used for interbacterial competition and niche occupancy, Cell Host Microbe, vol.21, pp.769-776, 2017.

E. T. Arena, F. Campbell-valois, and J. Tinevez, Bioimage analysis of Shigella infection reveals targeting of colonic crypts, Proc Natl Acad Sci, vol.112, pp.3282-90, 2015.

K. M. Bennett, E. A. Parnell, and C. Sanscartier, Induction of colonic m cells during intestinal inflammation, Am J Pathol, vol.186, pp.1166-79, 2016.

M. L. Bernardini, J. Mounier, and H. Hauteville, Identification of icsA, a plasmid locus of Shigella flexneri that governs bacterial intra-and intercellular spread through interaction with F-actin, Proc Nat Acad Sci, vol.86, pp.3867-71, 1989.

G. Birchenough, E. Nyström, and M. Johansson, A sentinel goblet cell guards the colonic crypt by triggering Nlrp6-dependent Muc2 secretion, Science, vol.352, pp.1535-1577, 2016.

C. Bongrand, P. J. Sansonetti, and C. Parsot, Characterization of the promoter, MxiE box and 5' UTR of genes controlled by the activity of the type III secretion apparatus in Shigella flexneri. Mantis NJ (ed), PLoS ONE, vol.7, p.32862, 2012.

C. Buchrieser, P. Glaser, and C. Rusniok, The virulence plasmid pWR100 and the repertoire of proteins secreted by the type III secretion apparatus of Shigella flexneri, Mol Microbiol, vol.38, pp.760-71, 2000.

F. Campbell-valois and S. M. Pontier, Implications of spatiotemporal regulation of shigella flexneri type three secretion activity on effector functions: think globally, act locally, Front Cell Infect Microbiol, vol.6, p.28, 2016.

F. Campbell-valois, M. Sachse, and P. J. Sansonetti, Escape of actively secreting shigella flexnerifrom atg8/lc3-positive vacuoles formed during cell-to-cell spread is facilitated by icsb and virA, mBio, vol.6, pp.2567-2581, 2015.

F. Campbell-valois and P. J. Sansonetti, Tracking bacterial pathogens with genetically-encoded reporters, FEBS Lett, vol.588, pp.2428-2464, 2014.

F. Campbell-valois, P. Schnupf, and G. Nigro, A fluorescent reporter reveals on/off regulation of the shigella type iii secretion apparatus during entry and cell-to-cell spread, Cell Host and Microbe, vol.15, pp.177-89, 2014.

F. Campbell-valois, P. Schnupf, and P. J. Sansonetti, Design of a transcription-based secretion activity reporter (TSAR) of the type III secretion apparatus of Shigella flexneri and Uses Thereof, Bio-protocol, vol.4, p.1270, 2014.

P. Cossart and P. J. Sansonetti, Bacterial invasion: the paradigms of enteroinvasive pathogens, Science, vol.304, pp.242-250, 2004.
URL : https://hal.archives-ouvertes.fr/hal-02683278

L. D. Cunha and D. S. Zamboni, Subversion of inflammasome activation and pyroptosis by pathogenic bacteria, Front Cell Infect Microbiol, vol.3, p.76, 2013.

H. W. Deane, Some electron microscopic observations on the lamina propria of the gut, with comments on the close association of macrophages, plasma cells, and eosinophils, The Anatomical Record, vol.149, pp.453-74, 1964.

N. Dupont, S. Lacas-gervais, and J. Bertout, Shigella phagocytic vacuolar membrane remnants participate in the cellular response to pathogen invasion and are regulated by autophagy, Cell Host Microbe, vol.6, pp.137-186, 2009.
URL : https://hal.archives-ouvertes.fr/hal-02109149

M. L. Ferrari, V. Malardé, and A. Grassart, Shigella promotes major alteration of gut epithelial physiology and tissue invasion by shutting off host intracellular transport, Proc Natl Acad Sci, vol.116, pp.13582-91, 2019.
URL : https://hal.archives-ouvertes.fr/pasteur-02167942

M. Franç-ois, L. Cabec, V. Dupont, and M. A. , Induction of necrosis in human neutrophils by Shigella flexneri requires type III secretion, IpaB and IpaC invasins, and actin polymerization, Infection and Immunity, vol.68, pp.1289-96, 2000.

Y. Fujimura, M. Hosobe, and T. Kihara, Ultrastructural study of m cells from colonic lymphoid nodules obtained by colonoscopic biopsy, Dig Dis Sci, vol.37, pp.1089-98, 1992.

A. Grassart, V. Malardé, and S. Gobba, Bioengineered human organ-on-chip reveals intestinal microenvironment and mechanical forces impacting Shigella infection, Cell Host Microbe, vol.26, pp.435-479, 2019.
URL : https://hal.archives-ouvertes.fr/pasteur-02579884

S. Helaine, J. A. Thompson, and K. G. Watson, Dynamics of intracellular bacterial replication at the single cell level, Proc Natl Acad Sci, vol.107, pp.3746-51, 2010.

B. Hu, D. R. Morado, and W. Margolin, Visualization of the type III secretion sorting platform of Shigella flexneri, Proc Natl Acad Sci, vol.112, pp.1047-52, 2015.

M. Johansson, H. Sjövall, and G. C. Hansson, The gastrointestinal mucus system in health and disease, Nature Publishing Group, vol.10, pp.352-61, 2013.

E. Kang, A. Crouse, and L. Chevallier, Enterobacteria and host resistance to infection, Mamm Genome, vol.29, pp.558-76, 2018.
URL : https://hal.archives-ouvertes.fr/pasteur-02552576

K. L. Kotloff, M. S. Riddle, and J. A. Platts-mills, Shigellosis. The Lancet, vol.391, pp.801-813, 2018.

B. Marteyn, N. P. West, and D. F. Browning, Modulation of Shigella virulence in response to available oxygen in vivo, Science, vol.465, pp.355-363, 2010.
URL : https://hal.archives-ouvertes.fr/pasteur-00493767

J. Mounier, T. Vasselon, and R. Hellio, Shigella flexneri enters human colonic Caco-2 epithelial cells through the basolateral pole, Infection and Immunity, vol.60, pp.237-285, 1992.

A. M. Mowat and W. W. Agace, Regional specialization within the intestinal immune system, Nat Rev Immunol, vol.14, pp.667-85, 2014.

W. W. Navarre and A. Zychlinsky, Pathogen-induced apoptosis of macrophages: a common end for different pathogenic strategies, Cellular Microbiology, vol.2, pp.265-73, 2000.

I. Paz, M. Sachse, and N. Dupont, Galectin-3, a marker for vacuole lysis by invasive pathogens, Cell Microbiol, vol.12, pp.530-574, 2010.
URL : https://hal.archives-ouvertes.fr/hal-00486248

L. Pinaud, M. L. Ferrari, and R. Friedman, Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome. Mantis NJ (ed), PLoS ONE, vol.12, p.186920, 2017.

P. J. Sansonetti, D. J. Kopecko, and S. B. Formal, Involvement of a plasmid in the invasive ability of Shigella flexneri, Infect Immun, vol.35, pp.852-60, 1982.

P. J. Sansonetti and A. Phalipon, M cells as ports of entry for enteroinvasive pathogens: mechanisms of interaction, consequences for the disease process, Semin Immunol, vol.11, pp.193-203, 1999.

J. Schindelin, I. Arganda-carreras, and E. Frise, Fiji: an opensource platform for biological-image analysis, Nat Methods, vol.9, pp.676-82, 2012.

D. H. Shim, T. Suzuki, and C. Sy, New animal model of shigellosis in the Guinea pig: its usefulness for protective efficacy studies, J Immunol, vol.178, pp.2476-82, 2007.

M. Singer and P. J. Sansonetti, IL-8 is a key chemokine regulating neutrophil recruitment in a new mouse model of Shigellainduced colitis, J Immunol, vol.173, pp.4197-206, 2004.

R. D. Specian, Mechanism of rapid mucus secretion in goblet cells stimulated by acetylcholine, J Cell Biol, vol.85, pp.626-666, 1980.

B. Sperandio, N. Fischer, and C. Mj, Virulent shigella flexneri affects secretion, expression, and glycosylation of gel-forming mucins in mucus-producing cells, Infect Immun, vol.81, pp.3632-3675, 2013.

S. Suzuki, H. Mimuro, and M. Kim, Shigella IpaH7.8 E3 ubiquitin ligase targets glomulin and activates inflammasomes to demolish macrophages, Proc Natl Acad Sci, vol.111, pp.4254-63, 2014.

A. Takeuchi, H. Sprinz, and E. H. Labrec, An electron microscopic study of the response of the intestinal mucosa to bacterial invasion, Am J Pathol, vol.47, pp.1011-1055, 1965.

J. Tinevez, E. T. Arena, and M. Anderson, Shigella-mediated oxygen depletion is essential for intestinal mucosa colonization, Nat Microbiol, vol.4, pp.2001-2010, 2019.
URL : https://hal.archives-ouvertes.fr/hal-02402067

A. Zychlinsky, C. Fitting, and J. M. Cavaillon, Interleukin 1 is released by murine macrophages during apoptosis induced by Shigella flexneri, J Clin Invest, vol.94, pp.1328-1360, 1994.

A. Zychlinsky, B. Kenny, and R. Menard, IpaB mediates macrophage apoptosis induced by Shigella flexneri, Mol Microbiol, vol.11, pp.619-646, 1994.